*Loan,banking and credit>>>consolidation loan

If you get a debt consolidation loan does it count against you when you apply for a mortgage later?

This is a question re Canadian mortgages.

Well I am in the US but it does count against you here, it significantly lowers your credit score and shows on the report that it is being handled by a credit counseling agency. You'd think they'd be glad you are paying your debt instead of filing for bankruptcy, but it does count against you in a major way.

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Not as long as you were not in default of the loans being consolidated. In fact, it may help a bit in that your report will show the prior loans being paid off on schedule, and the single loan in good standing.
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It should be the same as any other debt. If you have a record of paying off debts in the past, and are making your payments on time now, and have a good credit rating and enough income to cover the payment, you should be able to get your mortgage.
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Any outstanding debt will factor into the approval process. Of course if it's current you'll be in much better shape than if it's delinquent.

A debt consolidation loan won't increase your total debt if you use it exclusively for the stated purpose so should have little impact on your creditworthiness.